vg::algorithms::Anchor Member List

This is the complete list of members for vg::algorithms::Anchor, including all inherited members.

add_path(size_t path)	vg::algorithms::Anchor	inline
add_paths(const std::vector< size_t > &anchor_paths)	vg::algorithms::Anchor	inline
Anchor(size_t read_start, const pos_t &graph_start, size_t length, size_t margin_before, size_t margin_after, int score, size_t seed_number=std::numeric_limits< size_t >::max(), ZipCode *hint=nullptr, size_t hint_start=0, bool skippable=false, path_flags_t paths=0)	vg::algorithms::Anchor	inline
Anchor(const Anchor &first, const Anchor &last, size_t extra_margin_before, size_t extra_margin_after, int score)	vg::algorithms::Anchor	inline
Anchor()=default	vg::algorithms::Anchor
Anchor(const Anchor &other)=default	vg::algorithms::Anchor
Anchor(Anchor &&other)=default	vg::algorithms::Anchor
anchor_end_paths() const	vg::algorithms::Anchor	inline
anchor_paths() const	vg::algorithms::Anchor	inline
anchor_start_paths() const	vg::algorithms::Anchor	inline
base_seed_length() const	vg::algorithms::Anchor	inline
clear_paths()	vg::algorithms::Anchor	inline
end_hint() const	vg::algorithms::Anchor	inline
end_hint_offset() const	vg::algorithms::Anchor	inline
end_offset	vg::algorithms::Anchor	protected
end_paths	vg::algorithms::Anchor	protected
end_pos	vg::algorithms::Anchor	protected
end_seed	vg::algorithms::Anchor	protected
end_zip	vg::algorithms::Anchor	protected
graph_end() const	vg::algorithms::Anchor	inline
graph_start() const	vg::algorithms::Anchor	inline
is_skippable() const	vg::algorithms::Anchor	inline
length() const	vg::algorithms::Anchor	inline
margin_after	vg::algorithms::Anchor	protected
margin_before	vg::algorithms::Anchor	protected
operator=(const Anchor &other)=default	vg::algorithms::Anchor
operator=(Anchor &&other)=default	vg::algorithms::Anchor
points	vg::algorithms::Anchor	protected
read_end() const	vg::algorithms::Anchor	inline
read_exclusion_end() const	vg::algorithms::Anchor	inline
read_exclusion_start() const	vg::algorithms::Anchor	inline
read_start() const	vg::algorithms::Anchor	inline
score() const	vg::algorithms::Anchor	inline
seed_end() const	vg::algorithms::Anchor	inline
seed_length	vg::algorithms::Anchor	protected
seed_start() const	vg::algorithms::Anchor	inline
set_paths(const path_flags_t anchor_paths)	vg::algorithms::Anchor	inline
set_paths(size_t anchor_start_paths, size_t anchor_end_paths)	vg::algorithms::Anchor	inline
set_paths(const std::vector< size_t > &anchor_paths)	vg::algorithms::Anchor	inline
size	vg::algorithms::Anchor	protected
skippable	vg::algorithms::Anchor	protected
start	vg::algorithms::Anchor	protected
start_hint() const	vg::algorithms::Anchor	inline
start_hint_offset() const	vg::algorithms::Anchor	inline
start_offset	vg::algorithms::Anchor	protected
start_paths	vg::algorithms::Anchor	protected
start_pos	vg::algorithms::Anchor	protected
start_seed	vg::algorithms::Anchor	protected
start_zip	vg::algorithms::Anchor	protected
update_end_paths(const path_flags_t &new_paths)	vg::algorithms::Anchor	inline
update_paths(const path_flags_t &new_paths)	vg::algorithms::Anchor	inline
update_paths(const std::vector< size_t > &haplotypes)	vg::algorithms::Anchor	inline
update_start_paths(const path_flags_t &new_paths)	vg::algorithms::Anchor	inline